Package: ceas 1.3.0
Rachel House
ceas: Cellular Energetics Analysis Software
Measuring cellular energetics is essential to understanding a matrix’s (e.g. cell, tissue or biofluid) metabolic state. The Agilent Seahorse machine is a common method to measure real-time cellular energetics, but existing analysis tools are highly manual or lack functionality. The Cellular Energetics Analysis Software (ceas) R package fills this analytical gap by providing modular and automated Seahorse data analysis and visualization using the methods described by Mookerjee et al. (2017) <doi:10.1074/jbc.m116.774471>.
Authors:
ceas_1.3.0.tar.gz
ceas_1.3.0.zip(r-4.7)ceas_1.3.0.zip(r-4.6)ceas_1.3.0.zip(r-4.5)
ceas_1.3.0.tgz(r-4.6-any)ceas_1.3.0.tgz(r-4.5-any)
ceas_1.3.0.tar.gz(r-4.7-any)ceas_1.3.0.tar.gz(r-4.6-any)
ceas_1.3.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
ceas/json (API)
NEWS
| # Install 'ceas' in R: |
| install.packages('ceas', repos = c('https://jamespeapen.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/jamespeapen/ceas/issues
Pkgdown/docs site:https://jamespeapen.github.io
Last updated from:f638894b1d. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 174 | ||
| source / vignettes | OK | 202 | ||
| linux-release-x86_64 | OK | 164 | ||
| macos-release-arm64 | OK | 142 | ||
| macos-oldrel-arm64 | OK | 148 | ||
| windows-devel | OK | 120 | ||
| windows-release | OK | 130 | ||
| windows-oldrel | OK | 132 | ||
| wasm-release | OK | 111 |
Exports:atp_plotbioscope_plotenergetics_lme_summaryenergetics_ols_summaryfit_lmeget_energeticsget_energetics_summaryget_rate_summarymake_bioscope_plotnormalizepartition_datarate_plotrates_lme_summaryread_data
Dependencies:bootcellrangerclicpp11crayondata.tablefarverggplot2gluegtablehmsisobandlabelinglatticelifecyclelme4magrittrMASSMatrixminqanlmenloptrpillarpkgconfigprettyunitsprogressR6rbibutilsRColorBrewerRcppRcppEigenRdpackreadxlreformulasrematchrlangS7scalestibbleutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| ATP Plot | atp_plot |
| Bioenergetic Scope Plot | bioscope_plot |
| Get mean and confidence intervals from energetics mixed-effects models | energetics_lme_summary |
| Get ordinary least squares mean and confidence intervals from energetics | energetics_ols_summary |
| Calculate ATP Production from OXPHOS and Glycolysis | get_energetics |
| Calculate ATP Production Mean and Standard Deviation | get_energetics_summary |
| Rates summary | get_rate_summary |
| Bioenergetic Scope Plot Shortcut | make_bioscope_plot |
| Normalize Seahorse data | normalize |
| Organize Seahorse Data | partition_data |
| Rate plot | rate_plot |
| Read Seahorse Wave Excel File | read_data |